NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180117_1318645

Scaffold Ga0180117_1318645


Overview

Basic Information
Taxon OID3300019248 Open in IMG/M
Scaffold IDGa0180117_1318645 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9228Long. (o)-106.9513Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024104Metagenome / Metatranscriptome207Y
F033016Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0180117_13186451F024104AGGMPVRPFGSTTAPRIAPDAAVSLPVARCTSTTRYGLPRLPSPLPSGTVASLGIKAFNDVCCLPVHLTNPPDYLSLPATRPNESWGNGSSFQVRYVSAGLLFLKP
Ga0180117_13186452F033016GGAGMEAAERWQPLRVSEKPLRATGSGLEAASGEPGSIDPAAGENSHRG

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