NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187795_1284019

Scaffold Ga0187795_1284019


Overview

Basic Information
Taxon OID3300019251 Open in IMG/M
Scaffold IDGa0187795_1284019 Open in IMG/M
Source Dataset NameMetatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1930
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055497Metagenome / Metatranscriptome138Y
F086726Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0187795_12840192F086726N/ALSGNPTSISDHLFLGPGFNVSVYSIDWERPRVSRPWVWSGCQDNEIGNCVGSEIDIGFYPVVNGTAGGLADYFGPEPTYQPPSVNGATYFGGLFQGPGGTDCFTGTSPSNSCAEMDGGGRNVLPGFANAHDVYFGQSGRYAFVGGYTSGSFGFLRASKLLKNSMWNCAIVCWPSHFSEGQYNLAAYTYGYIQDKDFTAYVMNGQVADMKINLIIGVNVSLDILSRKRASSHQRT
Ga0187795_12840193F055497N/AMNMSARVRLFNDQGQLVATWMSSEGTYVDETGHAIAANGALTNCQTTAGVGCFPRYPFITQGGSPITVTSSGLNSYNFLPGGTTLLHVLMAGLPQQIPLGSDITGVYFGDPIFTSGSCDFELDCFPAAYAQYPFPYSGIAGAPDYTGGWTAEADFVPWYGNNTSSAQIPWTDVTASLGSGNYYPPVNGLLMGESYHIIPGTTATSAISLTEDAALSSTFVGHTMAANHLGPYSQEGVWQIAGTHN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.