NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182061_1358927

Scaffold Ga0182061_1358927


Overview

Basic Information
Taxon OID3300019266 Open in IMG/M
Scaffold IDGa0182061_1358927 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101407AT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1630
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062407Metagenome / Metatranscriptome130Y
F092983Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0182061_13589273F062407N/AMNKQKNLYRFKPLKRKLRGLGFVLDDYATYVNKDEVSFKYPYVYLGMLLCYAGFILVDKYHSSLFLSPF
Ga0182061_13589274F092983GGAGMNLTEEIIKATTNQKDDELPLLEDLFDFCQSEDRVHPFGLRYENGPFAVIRNHKDFISNIFPPNQCLFAAFDDPLETKRERLLTHIFWAFKKGLIFEFSRELLKLHEKEWYRESNELEWESDNLRVFSIHEISNIYDIFEQEANEELRKN
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