NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181512_1638178

Scaffold Ga0181512_1638178


Overview

Basic Information
Taxon OID3300019270 Open in IMG/M
Scaffold IDGa0181512_1638178 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075741Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0181512_16381781F075741N/ALIQSLFDIMHTLLIVFIACGCLGLISADISSSIIEADLAEISQLAHDFRQASPNIARQFTETTCQMISQCCPQIQSSFASMSLSGKTDAVLEQCFGRKDSSTALSNLMSCKPFVKITTLSKNPQFTKYATIVSKKSTQNNEDMKLTLAACSEQEIQSIACEWNVSDLQTSCQQKVLQTLAQQGDQVYINKVQQIKDGYIKLTNELNKAF
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