NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182073_1584236

Scaffold Ga0182073_1584236


Overview

Basic Information
Taxon OID3300019274 Open in IMG/M
Scaffold IDGa0182073_1584236 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071405CT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)561
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062407Metagenome / Metatranscriptome130Y
F079409Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0182073_15842361F062407N/AMNKQKNLYRFKPLKSKLRGLGFVLDDYATYVDKDEVSFKYPYVYLGMLLCYAGFILVDKYHHSLFLSPF
Ga0182073_15842362F079409N/AVRLGIVPKVLKQEVIMAKYTWSIAGKDDKIFKEDFTISNTKPRYRIGSKETADKFNKGGAQVIPIEPKNKI

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