NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187800_1058666

Scaffold Ga0187800_1058666


Overview

Basic Information
Taxon OID3300019278 Open in IMG/M
Scaffold IDGa0187800_1058666 Open in IMG/M
Source Dataset NameMetatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)853
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008195Metagenome / Metatranscriptome337Y
F028867Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0187800_10586661F008195GGAGGMKTTTVPLRHLIALLGVLCLLSSCSTSSPSGCPVCGTQQNAPIGLINVMFVPEHNPNGEPGGPFNIFDISWADPTNRTYYVSDRIGLDVPVFSTVNDVALWAIGGDNSVAEAGNNASSCWVGAGGETVPPTTTAQGNYTRFGCKTLTFRLPGGFGPNGQFGGFVGGQCCASRANNLNPLSGPNGLEISGDGNFLFVGNGSSSLFVFDLAAAIA
Ga0187800_10586662F028867N/APITPVIAPGFNDTTDEFTAGFNWYLNYWVLLKTDVNLDRLKEPSVQGILPRNYVVFLETVQFRF
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