NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182058_1734153

Scaffold Ga0182058_1734153


Overview

Basic Information
Taxon OID3300019283 Open in IMG/M
Scaffold IDGa0182058_1734153 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101404CT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2075
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067700Metagenome / Metatranscriptome125N
F082630Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0182058_17341533F067700N/ALGVKAMSDTWGEWLKVPLVGVVGISVTGSTIDEWLRICIAAATLVYTIAKAGSAVIEFKRKRNEKRN
Ga0182058_17341534F082630N/AMKNAIEIGFLAAAIFALSGCSVLEKATGWAYEAEVSTQVLPDGTEQSVTNWVTKPNVKTGITIGGQLTPQPVGGIASQAILALLGIGAAIRGRQWKKAAVSGVEAAQELKQALNKSNAKGKLETILGNLK

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