NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187840_10001573

Scaffold Ga0187840_10001573


Overview

Basic Information
Taxon OID3300019289 Open in IMG/M
Scaffold IDGa0187840_10001573 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_HostDNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3099
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080678Metagenome115N
F088087Metagenome109N
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0187840_100015732F100012GGAGGMDREQVRQALEVVQAEFGITDLDHFIRSAWEDGDIVNAEGVAELVERATEIVLNQHFLWVHIVEFEDTELRIPNGWYSFVAVHPETGQCLTFINDQVYRWKCAGFRARIRSADDAIDAVTRLTELIEQNLMSRAVK
Ga0187840_100015735F080678GGAGGMFVRKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLQFPFLRGISAGKFMKKLHRLGVTWSFNRSVMRRGVLQAVGYKLLDIEAYEHARTFGRREEVDAHAGI
Ga0187840_100015736F088087GAGGMLKAGDSSVWTPVTVSSAPCEICRRKSRSVVYECTEGKWAGVRVVACPEHAERAIEQFIAGGEERCS
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