Scaffold Ga0187894_10105570

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187894_10105570

Scaffold Ga0187894_10105570

Overview

Basic Information
Taxon OID	3300019360 Open in IMG/M
Scaffold ID	Ga0187894_10105570 Open in IMG/M
Source Dataset Name	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1498
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	USA: Hawaii
Coordinates	Lat. (^o)	19.2894	Long. (^o)	-155.8119	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072231	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187894_101055702	F072231	N/A	MKNQEFLVLLDARIEEVARAVFLECEGAREASAQPSDDAPAKLREQLAFIKAKEHLTVKEAALLLSCSESHIRKLVMLARKGKTRRPVPYIDLEGVIIFPREILLDWASAKSQIQVVKYEAA

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