Scaffold Ga0173479_10048454

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0173479_10048454

Scaffold Ga0173479_10048454

Overview

Basic Information
Taxon OID	3300019362 Open in IMG/M
Scaffold ID	Ga0173479_10048454 Open in IMG/M
Source Dataset Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1383
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000674	Metagenome / Metatranscriptome	941	Y
F017139	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0173479_100484542	F017139	AGGAGG	MPRFARISLIAFAAIATSCSSERPQKEESKEIGRQLTATYYSCVRTSFASQLPTMVDRNMAMDQAFMVCQTEEAKLQAFENTLTGNPNVGSASMSVHRNKLREELSRR
Ga0173479_100484543	F000674	GAGG	MNELRSIFLRSIFIGPLLLTWLAGAQEHRFEDDPIVAVRKNFVACDVLSQLQRVMGNPRFLLAGECEPLRAGDQVRVYARRGPYFCIYPHDRMSPCKWTHEKALSK

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