NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187898_1191444

Scaffold Ga0187898_1191444


Overview

Basic Information
Taxon OID3300019375 Open in IMG/M
Scaffold IDGa0187898_1191444 Open in IMG/M
Source Dataset NameGoat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)690
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4148Long. (o)-119.8405Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086383Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0187898_11914441F086383AGGTGGMTLHIALDGIYVNVNHIIVQKLVEYLTQKSYAVKTIFPIQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTNESVKPSFIKNINRFVPNMDIIVVVQPLEDKNQIIQKFNEVIQQFDNVYPVNFVYGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCCSNCKDYAKEEQNRQNFRNYYKRYKDTM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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