NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190264_10552510

Scaffold Ga0190264_10552510


Overview

Basic Information
Taxon OID3300019377 Open in IMG/M
Scaffold IDGa0190264_10552510 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)806
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.0262Long. (o)-109.5407Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074180Metagenome / Metatranscriptome120Y
F082895Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0190264_105525101F074180N/AMTSANARTVANLVLISAGVAAAYVVITTPPLRRLALR
Ga0190264_105525103F082895N/AKVKEETERVDQAIRTTIDRVDDTADRVRATVRTKTSRVIGVVRGIRAAIEGLLHSRHQPPASSSAAGTI

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