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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019487 Open in IMG/M |
| Scaffold ID | Ga0187893_10000148 Open in IMG/M |
| Source Dataset Name | White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 162398 |
| Total Scaffold Genes | 151 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 116 (76.82%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: the Island of Hawaii | |||||||
| Coordinates | Lat. (o) | 19.0643 | Long. (o) | -155.8008 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013593 | Metagenome / Metatranscriptome | 270 | Y |
| F022510 | Metagenome / Metatranscriptome | 214 | Y |
| F030603 | Metagenome | 185 | Y |
| F043144 | Metagenome / Metatranscriptome | 157 | Y |
| F069903 | Metagenome | 123 | Y |
| F085792 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187893_1000014817 | F043144 | AGGAGG | MKIVSRIKLTADRLTLAWLSIAIRYPRVYLVATTLIGIVSLILLFAPDASAQLETQVTDALNPLARLLVGPIAKGLAIIGLFAFVGLLYAGRWMMAVSSLVAAVILGLLANIVTAIFQGSNAASFTLGG |
| Ga0187893_100001483 | F085792 | N/A | MFGETSLEAIDGEKKTGGRLGLIIIILALAHAVLYLAPNLHLPFDLDELFLLGYALVLADSSLVVFLGIKFCTLLGNR |
| Ga0187893_100001484 | F069903 | AGG | MARKRITLSLDIGAPGDKAIFDFLTGLPKRTRSEIIKEILLDALEKKDENPKPDSPLTTKSGDAAGFDPDEIIEKLF |
| Ga0187893_1000014867 | F013593 | AGG | MSDINYSLETLTGKHGGLLEVVETIVSDGRVIMILTDEDVLQRRDAPLKGSFYRVVLPLARASIQLKGEAFELVRESLKFPEDGKGLENLMRELGR |
| Ga0187893_100001487 | F022510 | N/A | MALPPSILRQLWEAGYGGKVIRVPAKNQRLELKVIANEILKEAERLYESKGSTFVLERRGRSDFYRSFGALKLCRRFHLSIEEARKVRRRAYSRWSHWMRECEANMLRASDRSGESGEGRRAYLEVRKRIREGEEVAGVAAEILELAWASIRSVKWK |
| Ga0187893_1000014871 | F030603 | GGA | MKKNWYCKSVHVPPHVLTSLALSQYHFSTPEIRVLMRHILGYALSGRTIKRLAKSAGRRLKRGRPKTTPRVQKKQLNDLIETTSAGFDVFNGNVLHFLNHIELEFGLSPRQYLKWVTQYVRRGKCMMRRCLLCGGFFPSLDSGERHCRECQGDRRRLLNEERRSSFDFQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |