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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019487 Open in IMG/M |
| Scaffold ID | Ga0187893_10023813 Open in IMG/M |
| Source Dataset Name | White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7387 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: the Island of Hawaii | |||||||
| Coordinates | Lat. (o) | 19.0643 | Long. (o) | -155.8008 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037652 | Metagenome / Metatranscriptome | 167 | N |
| F064316 | Metagenome | 128 | N |
| F080330 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187893_1002381310 | F080330 | N/A | MKNAKTFALCALLAAATTGRLDADTSLKETNSFVHALSEGTRLSSQVVENIYLMPEQITKLIFPRPVDEVSVNTQVITITRNLADSKEHYLLLSPKVAKGDVNMHVVMDGQTYTFRLIVGKEMVNYRKTYTLRGPGSRNLPKVPPLAPSEINTSNLIRIIGQAMRDPNYAAVIAKDFTGSPQGRNYLWNGAQITLQDAWHYFPQDVIVLRVEVHNPTSNAIYLSASQVEPYIANTKFNYLLTQQGTKVLLPGQTDIKYLFIQGYGIDIEGAKFELRLPASVEQLSKP |
| Ga0187893_100238138 | F064316 | GAG | MLNRDKSATLDVTDPKATRPVKKQGTLKMILRQLQSAGSPPLVGEEVLPPKSVGAGNYHWYPLAWTRWLVRWERFKTLILLVVLLALVCVELVIRKRNSYEVNLPVPSTELLLKSRGFDTFNQSQAEAFFLFVVNAANQSSSEGMQNLNLLEGSMEPSIYLRLQQKGFNQKLTNIPLTEYPIYTSYIAEVTRWRYNPATRIVSAYVKGFRMSNTISGKGGMEKYRAMIEIFWEPMSNRNKWGYYVQKLDEFYGAAADAYDTELQNRDRSGF |
| Ga0187893_100238139 | F037652 | GAGG | MDPIPYTNFWAEEPETQKSAWRPTDESRRKLRQLWVVQGALLISIIVLAMMITRESKKVPPIYAKLPNGIVYETTAGPLKMDRLARMELVNNALQILYYQEGNYNYLDTIRQNVKPGIIAQLQVEMQSAIKQTNTTVYLNIAETFEILNIPAKGFEAMTKGELIKRSSKESTTAPIYVRTRWLKQDDRYLLSRIDEVKPGDYYDLFLAEKERLRKLSKEELQRELDVKKNRDIPLPKRNPLF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |