NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194021_1000820

Scaffold Ga0194021_1000820


Overview

Basic Information
Taxon OID3300019703 Open in IMG/M
Scaffold IDGa0194021_1000820 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1826
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039398Metagenome / Metatranscriptome164N
F058532Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0194021_10008202F058532N/AMMDGIIGIVPNIVGVDMTLNQNGRRQIVKDEYDLFDNKARTSWEFICNYMNWEIVKNKEDYFEDYVCKIKGIYYPMELQVAAYWHNHSIDKLSNFYISKSKIDLLRGYVDNYINVEAGCVFMNCVPNKFATINIKYIKNSYLMQNAQGEYFYKIPITENINYFTSGLIDAKCDCLENHLEIMQRSKGRMRHLEKEYNIRGFNGICCR
Ga0194021_10008203F039398GAGGMEYAADDINIGYMTCLMFINSEKTLVDKLNNITELQPIDHQGGVSFDLVLKSLPTYVEITMNHNGNFNIYTKTLKGETEFKDEVLETLINFLHIFYINMVDDENKLLMNAIDTTTYRKIAKRMHYRENFGNDLSGD
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