NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194021_1008923

Scaffold Ga0194021_1008923


Overview

Basic Information
Taxon OID3300019703 Open in IMG/M
Scaffold IDGa0194021_1008923 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)853
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022878Metagenome212N
F051086Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0194021_10089231F022878GGAGGMTSSRVSRYELILDDETGTVSDALRAWQGNRGLDLSERLPDADGFAYGQFAGRFSEDLYIPETDWQGMIEEREQQQSQLSDLIRHKQLAPLNQGNTNYCWANAPVHCLELVRMKQNQPLVRLSPASVAAPIKRFANRGGWGRDAIRWLADRGAVPVGSWPANSRDQKYYNDSNRELAKNYMVREWVECQPRNLSQMVSLLLLGIP
Ga0194021_10089232F051086N/ADSLQTVKWLDDNTDDWRRWDRSTAETDGELDKEEPVWRRIWQAARPALPEGPQLLIIQGKTITVRPLTSQVVQELEVAR
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