NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194003_1002818

Scaffold Ga0194003_1002818


Overview

Basic Information
Taxon OID3300019724 Open in IMG/M
Scaffold IDGa0194003_1002818 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_9-10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1394
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0194003_10028181F001655GAGGMKQPENDHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGLFENFEASVRRTAKALAESYTYWPEGYVHVQTIINEEYVNII
Ga0194003_10028182F002858AGGAGMAIDEKSIYLVDGGDYQIYCFGYTQARTVTNDIMRRDPWGGIPFVFEQDQLEVSFDDRGNVVMSRQTLDKILFIASDELPEGEG
Ga0194003_10028183F023856GGAGGMRCRACDRILEESELTRKDTHGNFLDLCGICLSATANAGVDTETIEYYQYEIFTEDEKYDTLY
Ga0194003_10028184F024320AGGGGGMTFEEYEQGYYSGDSEDPSGPPEDPETHAMIEHLVEFDTEMYRLDSRRKYKGLSYKQLEMLMVELHGREWRDAL
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