NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193968_1009614

Scaffold Ga0193968_1009614


Overview

Basic Information
Taxon OID3300019729 Open in IMG/M
Scaffold IDGa0193968_1009614 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1058
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028777Metagenome / Metatranscriptome190Y
F035554Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0193968_10096142F035554AGGAGGMAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKTATPNKKSLDEKVKDLEAEGLVEDISDKTQAIMDNIKDFAMEITNQDLDLARNYTAQALGSMGMSKTEVSINNLQSVKNKIQDIATMARTEIDKGE
Ga0193968_10096143F028777AGGGGGMLGIFGRNKPLSTFEIISLEKNISEAKKIRYILEVEGFICTLDKEFSASGNLRKVVHRLNNSYNLSIYKEECNCDNKQK
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