NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194014_1005358

Scaffold Ga0194014_1005358


Overview

Basic Information
Taxon OID3300019732 Open in IMG/M
Scaffold IDGa0194014_1005358 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1406
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028966Metagenome190N
F091572Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0194014_10053581F028966N/AQDDQYTGVAYQNFSINETRTYDGITYSFAPFGVTSGGGVRGGDRSSANLVAGADALSVNLFAEAVRLRYALEIKTVSLDPVTFADEALVAYETWRVASYELDTTKVVLRLTSSLDAVKAQVPRRTLSTELVGALPTSGSLVLS
Ga0194014_10053583F091572AGGAMMLPSDRYLADILGLTEEQYRHFQIEVRKRAAEGPQPAAVAGTALVLAIVNIVLSVGALALSALLKPAVPKLGQAPGSPRQRQESPDPVIRNSQFAPRYGFDSQQEIATLGSVIPIVYSNRELIDGDYYGGIRINMPMLWNQILSLGGGQMLRGVFLLGEGSFSSLDATGFAIGSSTLRGYLFESSSATEEGARVTVYFSADG
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