NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194014_1022160

Scaffold Ga0194014_1022160


Overview

Basic Information
Taxon OID3300019732 Open in IMG/M
Scaffold IDGa0194014_1022160 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)800
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018534Metagenome / Metatranscriptome234Y
F025729Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0194014_10221602F018534N/AMTHLPTLTDFLTSWDKLIVTGMTPERNDSVMTTTTNNIPVAIEYRHQINPSTGECSTIAYLVAYDSNGNRCTLRNQTYGCVGDEEKQFHQWFAKKMAEGCGLDVSNRLNVARAVDDWLAQ
Ga0194014_10221603F025729N/AMDKAILERLVYCEETYAGESETWQDPVTGDYYYVPIEIV

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