NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194012_1021029

Scaffold Ga0194012_1021029


Overview

Basic Information
Taxon OID3300019739 Open in IMG/M
Scaffold IDGa0194012_1021029 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_8-9_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)758
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015083Metagenome257N
F026887Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0194012_10210291F026887N/AGETVTYTRGAYSVSLLAVRGSTAWDRTAPFNGVRVGDRSTDWLFKQADLVDSGAAEMEPQRGDEVSVDGVTFRVMPYGPDNQLWMYHDRDRKFLRVHTKERV
Ga0194012_10210292F015083AGGAGMASRSATLANALVTAISGWASLPSGVTVARVRSVTHLLVDMPTAAVGRVAVIVSSVEDQSSRGDVAEDVTIGIAVIGNCDSEAVAQSDSWDEFTEELRDWLRTDAQFRNMDLGSGLAAQRRSVSTVTVADADLLDENEIFVSVTEGVWF
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Institute for Fundamental Biomedical Research
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