NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193965_1048583

Scaffold Ga0193965_1048583


Overview

Basic Information
Taxon OID3300019742 Open in IMG/M
Scaffold IDGa0193965_1048583 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)716
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1644Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003361Metagenome / Metatranscriptome492Y

Sequences

Protein IDFamilyRBSSequence
Ga0193965_10485832F003361N/AMKLTLNGALDLSRSINSQTIWNKRSTDYFNELAKELKQDSLNALENKPSPRSQAGRGNKNTGATRRSVFTAKLGNTNRLRMSEGFKLATDRQYAPFIHGKPIYRGFSPVKRTRPFFPPYKEGSSLAKWAKRGQPKMNPFLVARAISKRGLKLKPFIGGVVYEKQKEIKDRGQEMLELIARDIARSVR
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