Scaffold Ga0194002_1002444

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194002_1002444

Scaffold Ga0194002_1002444

Overview

Basic Information
Taxon OID	3300019745 Open in IMG/M
Scaffold ID	Ga0194002_1002444 Open in IMG/M
Source Dataset Name	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_8-9_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1869
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090341	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194002_10024444	F090341	GAG	MSLATEFYRVAMLSWLAFSAGVFGWQYMHKIGQRQLPRMLILSSMILWTCYGYHSVEVGRNLEAMAKAKQAIPVNHIPSLVAEYDRVTTGGGAQIEFIRTAPVGRSAERKIKSERLIGSIWPGLPGISDGGRVDIDSD

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