NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193983_1001025

Scaffold Ga0193983_1001025


Overview

Basic Information
Taxon OID3300019749 Open in IMG/M
Scaffold IDGa0193983_1001025 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLT_4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2281
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006728Metagenome / Metatranscriptome366Y
F008114Metagenome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0193983_10010255F008114AGGAGMNLTINTKAFPDADPGMLQEMLGVLPYWVREYNTLGTDMDIVGFMTERYGFGSLYQFKGDVQEDGTYSYPEDPDLPYVGKMNTPNGYVYFYQYAMLALPLPNGEYFVTRMD
Ga0193983_10010258F006728AGGMAKLDFNNIVVRHNGRTISIAQHWTRTSDGDFVNVQEIADIDDLHHCEDYDPIRFDDTVDGLINALQAIKKDIGQ

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