NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194000_1036695

Scaffold Ga0194000_1036695


Overview

Basic Information
Taxon OID3300019750 Open in IMG/M
Scaffold IDGa0194000_1036695 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062572Metagenome130N
F065561Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0194000_10366952F065561N/AMQIYQFTKEESSAIQRLALDEALSIATVTFQRARGEGKAYAYECSDIGAFQALVESTLQRKESVGRLVNQAMRDGTLQEAVSSEACAAS
Ga0194000_10366953F062572N/AHTLIGMNSFFTEERLVSMTLVNGKTVHRCMTIATSLQEALQRARLHYKQPMLELNGWGSRRLPVESLLIGGGYFIRSSRDEGHRHSLAQISSLR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.