NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194000_1044198

Scaffold Ga0194000_1044198


Overview

Basic Information
Taxon OID3300019750 Open in IMG/M
Scaffold IDGa0194000_1044198 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)656
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022192Metagenome215N
F084174Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0194000_10441981F022192N/AGYPVPDEQFNAAEHARNKIMRANQFQQLVLEQWIATYLDFYGLLESGGSRYTTPEMQLIIDAMPAATARDIMADSAAFVAFVNTAAPGAIADKYQSPAFVMTDDGQQITVGDLRPEWQPTPEV
Ga0194000_10441982F084174GGAGGMATQTVEFSAAPGQTVTAKLFTAGSDTVVQTASAVTEGTNRDGVYSGTFTDAAAGRYRLIATNANGTKLADWWVDIALATGTYPAYEMPVSAI
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