NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194029_1016109

Scaffold Ga0194029_1016109


Overview

Basic Information
Taxon OID3300019751 Open in IMG/M
Scaffold IDGa0194029_1016109 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1112
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F019909Metagenome / Metatranscriptome227Y
F032639Metagenome / Metatranscriptome179Y
F084107Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0194029_10161091F084107N/AMNEDLTLQISNAFNDTGAYKELNRLLFVSNTLGRQEIEELVDRLEAFIVQEVNEIIDER
Ga0194029_10161092F009699N/AMMTDKEAQAFMQKVDSSAPFWQELHSEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHSEFMGRFNEQNDAGQEQETD
Ga0194029_10161093F032639N/AMLDKNKKLINEDGFYAGSELMWGMDDVRNVLERFGMATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTITYMIEEGQLKTEE
Ga0194029_10161094F019909N/AMTKFEQHIGKQIPQEVLDYMASRTIEQIERQAQRLKFDSWCPLVMENDSPELRKELKQASDLLFQWIDFQSVTK
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