NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194029_1020899

Scaffold Ga0194029_1020899


Overview

Basic Information
Taxon OID3300019751 Open in IMG/M
Scaffold IDGa0194029_1020899 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1000
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004269Metagenome / Metatranscriptome446Y
F028815Metagenome / Metatranscriptome190Y
F029744Metagenome / Metatranscriptome187N

Sequences

Protein IDFamilyRBSSequence
Ga0194029_10208992F028815AGAAGGLISSNPQCLMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLMKLKNDYKDLPDINHLASFIMANRSNVKFRMQDRKTIFYSDLDKSQELIERFWDFWIGS
Ga0194029_10208993F004269AGGLKKDAQVLMTDAQKKNLWEFLERNVDDCLVTNYNIIDFLENKSPYCFGGYFYVKEEKYLTPIYMLAQQAIDKVIQFRKVKNGSNKKTTR
Ga0194029_10208994F029744AGGMEAIKKLRDKKIFNDKSIVESMIQKNWMGSPVIKRSLLRVRKVREDDC
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