NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194023_1012221

Scaffold Ga0194023_1012221


Overview

Basic Information
Taxon OID3300019756 Open in IMG/M
Scaffold IDGa0194023_1012221 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1725
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016522Metagenome246N
F095405Metagenome105N
F099216Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0194023_10122211F095405N/ALMEGVDMGGDCQDMGFPVCPRCRCGLLESAETEIAEWGTVVHCEECGCGSMVYVEPDGSYSSYCFAGHNWHMLNGCKVCSLCGVEDEGGL
Ga0194023_10122213F099216GGAMQVHDMEVGQSVEVPNATVKQGQRGTSWARRKASSCRRFAVTESGSGVIIERLPDRELVTDAIRNGGEKIFVRQSVETARQAIRRAIRAGELSGFWHVEPSGSGSMLQQMATQADVDAAAADYRRWRKSRR
Ga0194023_10122214F016522GGAMVHMVYKLDAVGRRRWLVGQLTAGDMAEEITRKPISRHGWSPQQGDAQRFSTEPEARAAADAVDHAVRRLGLCQVMEVV
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