Basic Information | |
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Taxon OID | 3300019756 Open in IMG/M |
Scaffold ID | Ga0194023_1012221 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1725 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware | |||||||
Coordinates | Lat. (o) | 38.7906 | Long. (o) | -75.1638 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016522 | Metagenome | 246 | N |
F095405 | Metagenome | 105 | N |
F099216 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0194023_10122211 | F095405 | N/A | LMEGVDMGGDCQDMGFPVCPRCRCGLLESAETEIAEWGTVVHCEECGCGSMVYVEPDGSYSSYCFAGHNWHMLNGCKVCSLCGVEDEGGL |
Ga0194023_10122213 | F099216 | GGA | MQVHDMEVGQSVEVPNATVKQGQRGTSWARRKASSCRRFAVTESGSGVIIERLPDRELVTDAIRNGGEKIFVRQSVETARQAIRRAIRAGELSGFWHVEPSGSGSMLQQMATQADVDAAAADYRRWRKSRR |
Ga0194023_10122214 | F016522 | GGA | MVHMVYKLDAVGRRRWLVGQLTAGDMAEEITRKPISRHGWSPQQGDAQRFSTEPEARAAADAVDHAVRRLGLCQVMEVV |
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