NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194023_1017425

Scaffold Ga0194023_1017425


Overview

Basic Information
Taxon OID3300019756 Open in IMG/M
Scaffold IDGa0194023_1017425 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1453
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018534Metagenome / Metatranscriptome234Y
F020115Metagenome / Metatranscriptome226Y
F025729Metagenome / Metatranscriptome200Y
F048249Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0194023_10174253F020115N/AMTYEQFEIFRQWAERVANTANDTDTHIRPIDIVHDIAGILANDEHFLPRL
Ga0194023_10174254F025729N/AMDKAILERLVYCEETYAGESETWQDPVTGDYYYVPIEIVRDWDNAMNLNDPN
Ga0194023_10174255F018534N/AMALPTLTDFLNSWDKLIVTGMTPERNDSVMTTTTNNIPVAIEYRHQINSSTGECSTIAFLVAYDENGNRVSLRNQTYGCFGDEEKQFHQWFAKKMAEGCGLDVSNRLNVARAVDDALS
Ga0194023_10174256F048249N/ARRTMKTSIFNTRIIRKGSQVLYRGSWGRDPQTIAEVIAIEQTDGPNEKYGDEVDAVSLDANYVLTLNNGHWCYSYQVDGLVQLPENEAVAK
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