NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194023_1031834

Scaffold Ga0194023_1031834


Overview

Basic Information
Taxon OID3300019756 Open in IMG/M
Scaffold IDGa0194023_1031834 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1068
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F029600Metagenome188Y
F032639Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0194023_10318341F009699N/ADKEAREFIAFMQKVDSSAPFWQELNNEDAPTIQIQGNALPVCLYNLMVTKRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAIHSELIGRLKEQDNAGQE
Ga0194023_10318342F032639N/AMLDKNKKLINEDGFYAGSELKWGMDDVRNVLERFGMATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIVYMIEEGQLKTDEQ
Ga0194023_10318343F029600N/AMKYWNGEGQYQDLFDKHWKNLVPESGRADTAEGNAMRAIAKINYDIFNNGAGNIVDQREEMDDDEEYYTHYSLNPWWNEYFDDIEEFAGLNVDRLKTKILGYVQFDHDGGLSELMDDYIDTIVLRVDNQPVTK
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