NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194023_1052647

Scaffold Ga0194023_1052647


Overview

Basic Information
Taxon OID3300019756 Open in IMG/M
Scaffold IDGa0194023_1052647 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)818
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016805Metagenome / Metatranscriptome244N
F025016Metagenome / Metatranscriptome203Y
F068605Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0194023_10526471F068605AGGCGGLRFGDKDWRHQLNKVARDHKFHATLKPKLDNAIEDWHKTQPAVVPPLIISSDELRITAPWATDEQPG
Ga0194023_10526472F025016N/AMDPTTIAIIAILAAAGSEIITLLPMRENSWIQLLIKVLNAIAQKK
Ga0194023_10526473F016805N/AVDPFLTPLVTAAIIAGVSALWRIDKRASVMDTRMALILEQITALRSDHKERLDDHEQRLRQIESRS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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