NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1000391

Scaffold Ga0194024_1000391


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1000391 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8608
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005010Metagenome415Y
F005132Metagenome / Metatranscriptome411Y
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y
F014252Metagenome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0194024_100039113F013231GGAMESNRNYHTCKLIRSKVDILLEEMAVLFTNIGIDSTVEEIQEAYRKEKELIERIAEIDPVKADNLRSSY
Ga0194024_100039115F008384N/ALKRNTRYNKEHIEEEAVLSLNQGRITEPLGSFIYQRAIEISGSAFITNGDKELKQALIDEAVMRVCEKFLHYYKEGGSAANLIITMIYSTMTNKIVGLKWKDKYGHRIKGKVVCIENGERLTRLVKYVKDDNISERL
Ga0194024_100039123F005132N/ALLALIQLEQYTSIQDLLGSCLYEDLETKVLEKILDTDEQELFKLVKYCLAMYSAKAAISVLRSETARTKNEEGKSDQRSLDAISSTVESKITYINKRIVNYILGKTAIKAIATAEGCDNDLFEAEDVYQDASVFYPKSSTSDSECE
Ga0194024_10003913F014252N/AMNEQEKATKILFYLLVFTIAMFALSVLALVYVYVHPTISL
Ga0194024_10003914F005010N/AMIRKYKHIREVQKFLDMLMIDQVNLTIQASRFGWTEELQNQLINSALLIRKYQRRLRLIK
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