NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1019857

Scaffold Ga0194024_1019857


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1019857 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1432
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016269Metagenome / Metatranscriptome248Y
F017473Metagenome240Y
F025275Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0194024_10198573F017473N/AMTTQRKEEHIRNIAFCIKTGASGYVTDNFRIDDLPTPQTAGTLSQQDAYARGKARIIFDAFIEQNPDINE
Ga0194024_10198574F016269N/AMNVNDFIFLCEEYNIDPAIASEDEGVRKILKTPTSSVNQQLMLSGYLHKNF
Ga0194024_10198575F025275N/AYSDTTVRWFNDLDKAMEAKRKTLESLMCRYEEVTSTTDGMQDIITMDADEGEQEILKIIELKPSFAENVSIREFFVWDQMNCEAPFDGEYLPSDMGVIKDLCERQEAVADTFNIETFHDFVNDLWYGGTAMFDADDLCVYYFQVPKPNQFTS
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