NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1021909

Scaffold Ga0194024_1021909


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1021909 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1366
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025731Metagenome / Metatranscriptome200Y
F027834Metagenome / Metatranscriptome193Y
F055727Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0194024_10219092F027834N/AMIKISFDEAMCFAYGSTMLTGGSSIGVMDNGEYYVPKYGFVVGGIVPEKSCDMDNKEDFKNWYNHFHLQAEVELERELAVVIGTWVEDGRIIFDLCSVLDDEQEALALAKKRGERAIYDLENQKEIFVK
Ga0194024_10219093F055727AGGMYNHFLDFSVDEMVDAYTYFTYIHDYEGCRLVGEAFAQNVSIDFQNF
Ga0194024_10219095F025731N/AMSYNTDTQRKKAQMASALFNDVQLLGFDAIRNTAGWDALSCDDQMRLEDLVGQAY
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