NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1024271

Scaffold Ga0194024_1024271


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1024271 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1303
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028038Metagenome / Metatranscriptome193Y
F074171Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0194024_10242711F074171N/AQYATPNANVQAMIESTKYMVASIAQSNNVRINWADKSQESGLSKKMSQLDLMDALRSDTEQIYRPFEKEQFRIAKRICEVSGGINLGDQFSIDFAEREVPMSTDEEIKYYSWAFQNDLETRQSYLRKKNPDFKEEEIQAIVEQIDAEQPQEADETQSIIDRIGEQVG
Ga0194024_10242712F028038N/AVSKLANLDFYNKEIENIQQQLIDKLDNLVVGLGKVTDTELMQIAKQIDFFAEMEALGFTKLINRVGKTFDDEIARVFAELSKRELGAVSVASIDALRELKNFEMTYLTNGVRQYSDQLKTAMLRGIITGESNIQIMNNINSTFGIGTYISSSETSFLINDAFSRFSNATRAKAFEEFPEIKFEYVGTSDDKTRDVCKRALQEKPLTRKQIDALGYVDFVNRGGYNCRHDWIRVR
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