Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1000420 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9257 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (11.11%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005814 | Metagenome | 389 | Y |
F006463 | Metagenome / Metatranscriptome | 372 | N |
F007860 | Metagenome / Metatranscriptome | 343 | Y |
F009958 | Metagenome / Metatranscriptome | 310 | Y |
F034772 | Metagenome / Metatranscriptome | 174 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181359_100042010 | F034772 | N/A | MKKLIDYFTPVTEEHKSFLRHFTSTLMVFIVLCAIFYCLMYFKAL |
Ga0181359_100042016 | F007860 | AGGA | MKTNILAVLYFVFGYITSFSLMVQGTELYINLAGITLFFYLTFSLTDALENLGL |
Ga0181359_10004203 | F005814 | N/A | MELDLLSSRINLNHTCIKLEISLYEIKTKHPNRTDLITSMQSSLKDIRRAMVVYEVLEKEFRVARQMNFNLERLNLEQKQEIQNLKRQIELNNIEL |
Ga0181359_10004208 | F006463 | N/A | MKAGTIYDQLDWWQRQDRGSFDLHLYLEICRIKKNEQIKFKEMKRFKATFKTWAYVGAPMKLETRIVEAYDTQHVKNLIQKNDDIIIEIKQIEK |
Ga0181359_10004209 | F009958 | N/A | MENRILEIHHREWILNYEFLGWQYQIFGTWEFKDYDEVSEFAFIELDVDVSEKWIIETDDHLQPHIINIRILEDVRLEMQEAINSDLVHYDFWEWKASNDESNYNFYHEL |
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