NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000420

Scaffold Ga0181359_1000420


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000420 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9257
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005814Metagenome389Y
F006463Metagenome / Metatranscriptome372N
F007860Metagenome / Metatranscriptome343Y
F009958Metagenome / Metatranscriptome310Y
F034772Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100042010F034772N/AMKKLIDYFTPVTEEHKSFLRHFTSTLMVFIVLCAIFYCLMYFKAL
Ga0181359_100042016F007860AGGAMKTNILAVLYFVFGYITSFSLMVQGTELYINLAGITLFFYLTFSLTDALENLGL
Ga0181359_10004203F005814N/AMELDLLSSRINLNHTCIKLEISLYEIKTKHPNRTDLITSMQSSLKDIRRAMVVYEVLEKEFRVARQMNFNLERLNLEQKQEIQNLKRQIELNNIEL
Ga0181359_10004208F006463N/AMKAGTIYDQLDWWQRQDRGSFDLHLYLEICRIKKNEQIKFKEMKRFKATFKTWAYVGAPMKLETRIVEAYDTQHVKNLIQKNDDIIIEIKQIEK
Ga0181359_10004209F009958N/AMENRILEIHHREWILNYEFLGWQYQIFGTWEFKDYDEVSEFAFIELDVDVSEKWIIETDDHLQPHIINIRILEDVRLEMQEAINSDLVHYDFWEWKASNDESNYNFYHEL
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