NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000503

Scaffold Ga0181359_1000503


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000503 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)8834
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F011844Metagenome / Metatranscriptome286Y
F067666Metagenome / Metatranscriptome125N
F103223Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10005031F103223N/AMKDCSNNIRVRYLAILNGNITYGGKNVPVYGTDAFETVPQNYIIIGDITESADNNNQLFVSGADVVIDIFSEQYMIRNNSIIDDIADQILTLLIPTTGVQDIGDNEFQIYATARTSSRYLTMQEGNNFINRKILIINNSIIQK
Ga0181359_10005032F011844N/AMGQILGSLQNVEIDVAGGSSYKNLVCLRTSSVNTTVDSTTEQTNCGPLTSVADATMGVDFDAICEVSPSGTQISYEDLLAAMVGKTLISVRVQNPVVSGSSAGAAYYHQFLGFVTSLTLNQSTAEFINFSGSVTSTGVVDVTP
Ga0181359_10005034F004112GAGMIRGSESRKVDTYKQTRLLMFTMVRLMGDPKTAPKTPEALWQLPGDEESGQLMSDDEMREIFKRLAK
Ga0181359_10005038F067666N/AMIGEHNLRPIKKGDTWVMTLAFYDDECETTPINVSTYVFKLQAKNSSGSVMIEWLDNVFVQIDNFTRRVTLTPTTTNSYTAGEYTYELQVGISTNSYTWMQGYVQVESQITS
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