NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1001193

Scaffold Ga0181359_1001193


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1001193 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6757
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F003304Metagenome494N
F020665Metagenome / Metatranscriptome222Y
F022371Metagenome / Metatranscriptome214Y
F037193Metagenome / Metatranscriptome168Y
F041081Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100119310F022371AGGAMFCLLDMAGVVWVIGWFVLYSSMTLSAIYCALYIIFKLIDYIRKELDL
Ga0181359_100119312F003304N/AMKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTKLANQIQADEAKLVELGR
Ga0181359_100119313F041081GAGGMIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHYFAEVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0181359_100119314F002009AGGAGGMTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRCLFTLAQIKKEVTRL
Ga0181359_10011935F037193GGTGGMKSKDELAMQVKKEWDGKYWRWRLWLEAGGFRTEIFCYSSAEEEYSKCVRELVDHAYQMQSV
Ga0181359_10011939F020665AGGAMKKRKAGKYIDVVKTEECKSVKITVNVDDDLYETLAEAGRQHIIKDKKACFEYALNKALLEMLEELK
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