NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1001517

Scaffold Ga0181359_1001517


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1001517 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6264
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031848Metagenome / Metatranscriptome181N
F079625Metagenome / Metatranscriptome115Y
F081032Metagenome / Metatranscriptome114N
F086647Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100151711F079625AGGGGGMKFACSRCGSRDWPDPDSSCPLCSDDREEPAEALGDPLEAQEQAVKRFTREGCGLLSSLRWWRSIDKQTDERLHPETMAERLAWLHSEACRDAWQDMEEPPSHYAWADVCALAGFDMAKHYRKPNQ
Ga0181359_10015172F031848N/AMSDLFPETGGDLSPRLKWQEAKRIKTLRREDGKWVAFKSETSHSYTDEVELDAVIGLAKKLKLRLWNQ
Ga0181359_10015173F086647N/AMEIELLTPVDAHKSGYLSLTRPYDQAKPHEVEWMKTVLRDLTGCNAVLVEVTGGYEVARHKSELILAESR
Ga0181359_10015177F081032AGGAGGVRVTHTPFKTKTRAIGSDLEMTLALVGALRNPNKSAINKLGKIATIIAKLIK
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