NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1003394

Scaffold Ga0181359_1003394


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1003394 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4872
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026552Metagenome197N
F036695Metagenome169N
F049433Metagenome146N
F049442Metagenome146N
F076079Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10033943F036695N/AMEMTYTDKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVNNKGQRGDGERMLYENNFDAYKLSETIVKKILRPLGLLKSISWGVLIVIDASGNRLIEHSMINVVMVKD
Ga0181359_10033944F076079N/AMKYLITESQKENIIKKYILSNFDRVDDVWFTNRSVYYGSGPINGKDRGEEIIINVLVNNLDDELTKPNLFELKQSIISKTDKTFNLGYNRYGGGWGFSFSQKTIQKF
Ga0181359_10033945F026552N/AMELTNVIEKLMNRDSFLNLLENDIIEKFEVNVSPFESKILVIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAYIIPNKILKPLVGKDYFIKILLFVVDKNGIHLFTE
Ga0181359_10033946F049442N/AMNKKNLEQGLTKLLKTFFTKKYDRDFSDLTVVLDEYEEDADDVDDEGNWSSAESYYFTVYSNDFDGLPIQKLYNLARELFGNIIGNSNWVDIEFKKYEN
Ga0181359_10033947F049433N/AMKKFIITEEEKTRILGMHQEYGYNSLNESPSGVGFGPEMNGLKIQKSEQNEQDVEQINDPKIINAVNTVLKKLMMSPKFSTDETLFSLIEQGKLVKAYRLHRDLNTNVDYVDYELLDDMLNNPETKDITRLLPNIKNLLINYFT
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