NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1003469

Scaffold Ga0181359_1003469


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1003469 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4836
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062760Metagenome130N
F063689Metagenome129Y
F066774Metagenome / Metatranscriptome126Y
F104778Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10034691F066774AGGAMTQDTTMGNLETWVRQLNGELNVQDIAKTRPAPIEDVVAPYSVFLRHYDKVGLCAATNKRRASRCNVEFVFDGNTRKLKNVRLINQDEE
Ga0181359_10034693F104778AGGAMETIKAWMVEEFDNNNNLVWKMISFFPPDSLEWMRDIRGKKHNLVISELGVINSKKIDGVEKKYDSSKFVVGL
Ga0181359_10034694F063689GAGMEVLFRFLVFDDFGEPHRRFRTKHEAETYIINKPNHKIERLPPQPKENVFDLITDEPPF
Ga0181359_10034697F062760AGGAMKHREWIVSNQNISQLTIYLEELIKQGKTPQVTIKEKASGDKRSLEANKFLWGKLYKSISQFTGYLPMEVHLLCGHLFLTEQKTINEVQVPYVRSTTDLSVEQFSTYIQHIETYFSQLGWSMDE
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Institute for Fundamental Biomedical Research
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