Basic Information | |
---|---|
Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1003469 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4836 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F062760 | Metagenome | 130 | N |
F063689 | Metagenome | 129 | Y |
F066774 | Metagenome / Metatranscriptome | 126 | Y |
F104778 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181359_10034691 | F066774 | AGGA | MTQDTTMGNLETWVRQLNGELNVQDIAKTRPAPIEDVVAPYSVFLRHYDKVGLCAATNKRRASRCNVEFVFDGNTRKLKNVRLINQDEE |
Ga0181359_10034693 | F104778 | AGGA | METIKAWMVEEFDNNNNLVWKMISFFPPDSLEWMRDIRGKKHNLVISELGVINSKKIDGVEKKYDSSKFVVGL |
Ga0181359_10034694 | F063689 | GAG | MEVLFRFLVFDDFGEPHRRFRTKHEAETYIINKPNHKIERLPPQPKENVFDLITDEPPF |
Ga0181359_10034697 | F062760 | AGGA | MKHREWIVSNQNISQLTIYLEELIKQGKTPQVTIKEKASGDKRSLEANKFLWGKLYKSISQFTGYLPMEVHLLCGHLFLTEQKTINEVQVPYVRSTTDLSVEQFSTYIQHIETYFSQLGWSMDE |
⦗Top⦘ |