NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1008462

Scaffold Ga0181359_1008462


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1008462 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3557
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-H1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015201Metagenome / Metatranscriptome256Y
F025487Metagenome201Y
F067537Metagenome / Metatranscriptome125N
F087066Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10084621F025487GGGGGMTHDFIDLDLVDKTIALIPEHAWTQVRQAIVTALVDNMPGSVIQHLTGSYDDFDRAEEILYDYYELPELSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQQ
Ga0181359_10084623F067537N/AMTTKRQFDYKIGDRVAERPKPHGIYTNNQQTRERISQYRSQRYGEVVGINYKNNSRGATQKFLLVRWDHLPSPTEHAIARICPVSALERLTKEVLVPGE
Ga0181359_10084625F087066GGAGGMTENQIQFLRGCCATILAFAATGLIAAIFLSPDEPKNNSKFEVLDQYEGCSVIRYTDPTTRWHYFLKCS
Ga0181359_10084628F015201GGAGGMNKALIVYLVDRKKKVARKDVESKHAIKQLEKQTTATF
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