Basic Information | |
---|---|
Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1008462 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3557 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (36.36%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-H1 | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015201 | Metagenome / Metatranscriptome | 256 | Y |
F025487 | Metagenome | 201 | Y |
F067537 | Metagenome / Metatranscriptome | 125 | N |
F087066 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181359_10084621 | F025487 | GGGGG | MTHDFIDLDLVDKTIALIPEHAWTQVRQAIVTALVDNMPGSVIQHLTGSYDDFDRAEEILYDYYELPELSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQQ |
Ga0181359_10084623 | F067537 | N/A | MTTKRQFDYKIGDRVAERPKPHGIYTNNQQTRERISQYRSQRYGEVVGINYKNNSRGATQKFLLVRWDHLPSPTEHAIARICPVSALERLTKEVLVPGE |
Ga0181359_10084625 | F087066 | GGAGG | MTENQIQFLRGCCATILAFAATGLIAAIFLSPDEPKNNSKFEVLDQYEGCSVIRYTDPTTRWHYFLKCS |
Ga0181359_10084628 | F015201 | GGAGG | MNKALIVYLVDRKKKVARKDVESKHAIKQLEKQTTATF |
⦗Top⦘ |