NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1010704

Scaffold Ga0181359_1010704


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1010704 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3267
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027829Metagenome193N
F041161Metagenome / Metatranscriptome160N
F079522Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10107044F079522GGAGMNQNVVYGKDREAIVPYDVAIWWHLAFDVDKSIFNPTHIPRDLIEEIQQLQRRSIIKALPDSDPGRKWLILRFFPDGI
Ga0181359_10107045F027829N/AMAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPDTGKTYTFRVYIAVSKMQKKLNYAPTILITITFFKYKLHLQSRDVKAIVSAFNKLSNFIDTASPNLENKLSQELLTYDQWEKEYLERKNNGIININRQ
Ga0181359_10107046F041161N/AMAIQVRDSISFANDFLPARTTCQEIWYILKDNFIYKNDPPGVELLQSFPSLMNDNYWGIPGAGDCDCATIAVLACARARNIPARAVIVGNSSHAPTHIYAQLFDGSKFVDFDLVSSTYGTTKAYKNKQIIKLH
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