NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1016958

Scaffold Ga0181359_1016958


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1016958 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2713
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F022820Metagenome / Metatranscriptome212Y
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_101695812F022820N/AMKHENRISKILEKKILKDEDPKLISEIEKYLAGLEIHYSKWAKAHPNWKQLEE
Ga0181359_10169582F010746N/AMTYKCAVSGEALSPERVEALQVLGVPESQWTKKEYSQTRKLKAVYAGDDGSNDIVICDAVDGGSLFDNSVVMEVENES
Ga0181359_10169583F035200GGAGGMNLKYIVLRDGIRVSEDMHTKLEDAEHEAEFWRKIIRSWPDGTKVTIKKIGG
Ga0181359_10169587F007359AGGAMKLIKQNLGAHWVIGIKGKPEKIKQYHNRIYNWGGTSGNLKWMSHNFAYFWITMEKLERAMFKYVMSSVSDKLGKKFRGAKGGLKVVVMNRVKNTINNIPVEHFHKTAESQDFYSLGTISAEKLDTDS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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