NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1016976

Scaffold Ga0181359_1016976


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1016976 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2713
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003212Metagenome / Metatranscriptome500Y
F011484Metagenome290Y
F023834Metagenome208Y
F093528Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_101697610F023834GAGGMNKEYWQAKADLCRDLAVIQIQEEETEKEAGMNLMRMTYALSMVDTYTEGKGE
Ga0181359_101697611F093528AGAAGGMTEETTTHVITVVVQAGQKWNKVELFDFSGGEPTQLAAGEGSNWRTALGEALSKISLSSDTPEKTINDIVKENIEGEGENE
Ga0181359_10169765F011484AGAAGGMKELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRALNLPQIMRGEG
Ga0181359_10169769F003212AGGGGGVKDKWLVTLEIETYDGDPKLWDWNYYLGDEFKIVSSEFKGRVLPTEEEGE
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