NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1018388

Scaffold Ga0181359_1018388


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1018388 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2619
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001897Metagenome / Metatranscriptome620Y
F009883Metagenome / Metatranscriptome311Y
F032155Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10183881F000403GGAMSDYMEIINPQTRIARLYYQGEVVDEYRVEQCDKCSKLTKFDAFGYQIGYDQTEKIIWFC
Ga0181359_10183882F001897AGGCGGMAFMDNYEGNKERTDRWLATFPKGRLEAHIIEFNAEKGYVLVQAKAWRDQSETEPAGIDYAYGYLAAYPDKMKRWMVEDSCTSALMRVMALVMGGAEKATQEVMALVKTETPAADYDYWTTEHGDVPSYKTAGEAEAAGTPSFGSSEDAWVPNAVPTCSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGNWEPQV
Ga0181359_10183883F009883GGAGMNEISIVIFMIIAGVLWAVMAYAVGFKEGQRQGYTRGRAVSRHISQLDKAAK
Ga0181359_10183884F032155N/AVSVGEWTAVGGFVIAILAAVYSSMRIIIRAVMSELLPNGGSSMKDQISRIEARLDYLYTQLIEKQSNTP
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