Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1020022 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2526 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F000903 | Metagenome / Metatranscriptome | 843 | Y |
F001897 | Metagenome / Metatranscriptome | 620 | Y |
F003182 | Metagenome / Metatranscriptome | 502 | Y |
F009883 | Metagenome / Metatranscriptome | 311 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181359_10200224 | F003182 | AGGAG | MHILLFDCSICSKMYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEELSQ |
Ga0181359_10200225 | F000903 | AGGAGG | MIAAIQHCHDRSADHGTRIVKDISWFAYVAQMAESMAAEYVVAKHLGYDYTPGITWDKSNADVGDHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNSPKMQIVGWMPVVVAKRPRYRNASQDNWSVPQINLQPIETLQRSNYAHSVI |
Ga0181359_10200226 | F000403 | AGG | MSDFVEIIYPQQMMARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQENIIWFCGDCR |
Ga0181359_10200227 | F001897 | GGA | MAAFMDGYEGNKERTDRWIATFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAYGYLAAYPDKMKRWMVEDSCTSALMRVMALVMGNTEKATKEVMSAIKTPAADYDYWTTKHGDVPSYKTSAEAEQSGTPSFGSSDDSAWLADATPSCVHGAMRWNQSKPDAAKLWAGYFCSEKIKEKQCRPNWYVMTSDGTFKPQV |
Ga0181359_10200228 | F009883 | N/A | RFAAPGIGSNKMNELSIVITMVIAGALWSVMAYSVGFKEGERQGYTRGRAVARHAVSADRKVW |
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