NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1020022

Scaffold Ga0181359_1020022


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1020022 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2526
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F003182Metagenome / Metatranscriptome502Y
F009883Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10200224F003182AGGAGMHILLFDCSICSKMYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEELSQ
Ga0181359_10200225F000903AGGAGGMIAAIQHCHDRSADHGTRIVKDISWFAYVAQMAESMAAEYVVAKHLGYDYTPGITWDKSNADVGDHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNSPKMQIVGWMPVVVAKRPRYRNASQDNWSVPQINLQPIETLQRSNYAHSVI
Ga0181359_10200226F000403AGGMSDFVEIIYPQQMMARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQENIIWFCGDCR
Ga0181359_10200227F001897GGAMAAFMDGYEGNKERTDRWIATFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAYGYLAAYPDKMKRWMVEDSCTSALMRVMALVMGNTEKATKEVMSAIKTPAADYDYWTTKHGDVPSYKTSAEAEQSGTPSFGSSDDSAWLADATPSCVHGAMRWNQSKPDAAKLWAGYFCSEKIKEKQCRPNWYVMTSDGTFKPQV
Ga0181359_10200228F009883N/ARFAAPGIGSNKMNELSIVITMVIAGALWSVMAYSVGFKEGERQGYTRGRAVARHAVSADRKVW
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