NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1021736

Scaffold Ga0181359_1021736


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1021736 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2434
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F003182Metagenome / Metatranscriptome502Y
F009883Metagenome / Metatranscriptome311Y
F032155Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10217363F032155AGGVSIGEWTAVGGFVIAILAAVYSSMRIIIRAVMSELAPNSGSSMKDQISRIEARLDYLYTHLIDQKK
Ga0181359_10217364F009883GGAGMNELSIVITMVIAGALWSVMAYSVGFKEGKRQGYTRGRAVARHAVSADRKVW
Ga0181359_10217365F001897GGAMAAFMDGYEGNKERTDRWIATFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAYGYLAAYPDKMKRWMVEDSCTSALMRVMALVMGNTEKATKEVMAAIKTPAADYDYWTTKHGDVPSYKTSAEAEESGTPSFGSSDDSAWLVDATPSCLHGVMRWNQSKPDAIKPWAGYFCSEKIKEKQCRPNWYVMTSDGTWKPQV
Ga0181359_10217366F000403GGAMSDYMEIIYPQKMMARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNTIWFCGDCR
Ga0181359_10217367F000903AGGAGGMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEYVVAKKLGYDYTPGITWDKSKADVGNHIEVKWSANPASNLWIQESDRQDRDIAVLVTGSSPKMHIVGWMPVAIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPAI
Ga0181359_10217368F003182AGGAGMHILQFDCSICSKLYGKPKQRHGLKKSAELTEHEWFAQCMSCGTFGIKIVDDARIAELSQ

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