NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1029599

Scaffold Ga0181359_1029599


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1029599 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2110
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047016Metagenome150N
F077232Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10295991F047016AGGAMSDNKIYSLNLSAQMILGIILSVLVPIGGAVYYGITLFNDLTSTIEEVKKMSSVETRIIVLEDRSRSTERQLVDVMMSNNRALEKANEAYGRAIEANSVAKSTADKITDTVTNVKDEMKQLRKV
Ga0181359_10295993F077232AGGAMLGTVISSLMTKVTSFLDLCLVVVSQMMTLCRTIIAVGIDRMTLIVQYIKSQCVALKLSIEPCLAQLINQVLLMKLGLMNVLHKVGQVGQQVLTIAHQIRQRVLNLLKQGR
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